Add per-server MCP network timeout configuration

src/core/webview/ClineProvider.ts

@@ -1177,6 +1177,16 @@ export class ClineProvider implements vscode.WebviewViewProvider {
 						}
 						await this.postStateToWebview()
 						break
+					case "updateMcpTimeout":
+						if (message.serverName && typeof message.timeout === "number") {
+							try {
+								await this.mcpHub?.updateServerTimeout(message.serverName, message.timeout)
+							} catch (error) {
+								console.error(`Failed to update timeout for ${message.serverName}:`, error)
+								vscode.window.showErrorMessage(`Failed to update server timeout`)
+							}
+						}
+						break
 					case "updateCustomMode":
 						if (message.modeConfig) {
 							await this.customModesManager.updateCustomMode(message.modeConfig.slug, message.modeConfig)

src/services/mcp/McpHub.ts

@@ -35,12 +35,13 @@ export type McpConnection = {
 // StdioServerParameters
 const AlwaysAllowSchema = z.array(z.string()).default([])
 
-const StdioConfigSchema = z.object({
+export const StdioConfigSchema = z.object({
 	command: z.string(),
 	args: z.array(z.string()).optional(),
 	env: z.record(z.string()).optional(),
 	alwaysAllow: AlwaysAllowSchema.optional(),
 	disabled: z.boolean().optional(),
+	timeout: z.number().min(1).max(3600).optional().default(60),
 })
 
 const McpSettingsSchema = z.object({
@@ -238,28 +239,6 @@ export class McpHub {
 			}
 			transport.start = async () => {} // No-op now, .connect() won't fail
 
-			// // Set up notification handlers
-			// client.setNotificationHandler(
-			// 	// @ts-ignore-next-line
-			// 	{ method: "notifications/tools/list_changed" },
-			// 	async () => {
-			// 		console.log(`Tools changed for server: ${name}`)
-			// 		connection.server.tools = await this.fetchTools(name)
-			// 		await this.notifyWebviewOfServerChanges()
-			// 	},
-			// )
-
-			// client.setNotificationHandler(
-			// 	// @ts-ignore-next-line
-			// 	{ method: "notifications/resources/list_changed" },
-			// 	async () => {
-			// 		console.log(`Resources changed for server: ${name}`)
-			// 		connection.server.resources = await this.fetchResources(name)
-			// 		connection.server.resourceTemplates = await this.fetchResourceTemplates(name)
-			// 		await this.notifyWebviewOfServerChanges()
-			// 	},
-			// )
-
 			// Connect
 			await client.connect(transport)
 			connection.server.status = "connected"
@@ -339,10 +318,6 @@ export class McpHub {
 		const connection = this.connections.find((conn) => conn.server.name === name)
 		if (connection) {
 			try {
-				// connection.client.removeNotificationHandler("notifications/tools/list_changed")
-				// connection.client.removeNotificationHandler("notifications/resources/list_changed")
-				// connection.client.removeNotificationHandler("notifications/stderr")
-				// connection.client.removeNotificationHandler("notifications/stderr")
 				await connection.transport.close()
 				await connection.client.close()
 			} catch (error) {
@@ -468,8 +443,6 @@ export class McpHub {
 		})
 	}
 
-	// Public methods for server management
-
 	public async toggleServerDisabled(serverName: string, disabled: boolean): Promise<void> {
 		let settingsPath: string
 		try {
@@ -545,6 +518,59 @@ export class McpHub {
 		}
 	}
 
+	public async updateServerTimeout(serverName: string, timeout: number): Promise<void> {
+		let settingsPath: string
+		try {
+			settingsPath = await this.getMcpSettingsFilePath()
+
+			// Ensure the settings file exists and is accessible
+			try {
+				await fs.access(settingsPath)
+			} catch (error) {
+				console.error("Settings file not accessible:", error)
+				throw new Error("Settings file not accessible")
+			}
+			const content = await fs.readFile(settingsPath, "utf-8")
+			const config = JSON.parse(content)
+
+			// Validate the config structure
+			if (!config || typeof config !== "object") {
+				throw new Error("Invalid config structure")
+			}
+
+			if (!config.mcpServers || typeof config.mcpServers !== "object") {
+				config.mcpServers = {}
+			}
+
+			if (config.mcpServers[serverName]) {
+				// Create a new server config object to ensure clean structure
+				const serverConfig = {
+					...config.mcpServers[serverName],
+					timeout,
+				}
+
+				config.mcpServers[serverName] = serverConfig
+
+				// Write the entire config back
+				const updatedConfig = {
+					mcpServers: config.mcpServers,
+				}
+
+				await fs.writeFile(settingsPath, JSON.stringify(updatedConfig, null, 2))
+				await this.notifyWebviewOfServerChanges()
+			}
+		} catch (error) {
+			console.error("Failed to update server timeout:", error)
+			if (error instanceof Error) {
+				console.error("Error details:", error.message, error.stack)
+			}
+			vscode.window.showErrorMessage(
+				`Failed to update server timeout: ${error instanceof Error ? error.message : String(error)}`,
+			)
+			throw error
+		}
+	}
+
 	async readResource(serverName: string, uri: string): Promise<McpResourceResponse> {
 		const connection = this.connections.find((conn) => conn.server.name === serverName)
 		if (!connection) {
@@ -579,6 +605,16 @@ export class McpHub {
 			throw new Error(`Server "${serverName}" is disabled and cannot be used`)
 		}
 
+		let timeout: number
+		try {
+			const parsedConfig = StdioConfigSchema.parse(JSON.parse(connection.server.config))
+			timeout = (parsedConfig.timeout ?? 60) * 1000
+		} catch (error) {
+			console.error("Failed to parse server config for timeout:", error)
+			// Default to 60 seconds if parsing fails
+			timeout = 60 * 1000
+		}
+
 		return await connection.client.request(
 			{
 				method: "tools/call",
@@ -588,6 +624,9 @@ export class McpHub {
 				},
 			},
 			CallToolResultSchema,
+			{
+				timeout,
+			},
 		)
 	}
 

src/services/mcp/__tests__/McpHub.test.ts

@@ -2,8 +2,8 @@ import type { McpHub as McpHubType } from "../McpHub"
 import type { ClineProvider } from "../../../core/webview/ClineProvider"
 import type { ExtensionContext, Uri } from "vscode"
 import type { McpConnection } from "../McpHub"
+import { StdioConfigSchema } from "../McpHub"
 
-const vscode = require("vscode")
 const fs = require("fs/promises")
 const { McpHub } = require("../McpHub")
 
@@ -280,6 +280,7 @@ describe("McpHub", () => {
 					},
 				},
 				expect.any(Object),
+				expect.objectContaining({ timeout: 60000 }), // Default 60 second timeout
 			)
 		})
 
@@ -288,5 +289,192 @@ describe("McpHub", () => {
 				"No connection found for server: non-existent-server",
 			)
 		})
+
+		describe("timeout configuration", () => {
+			it("should validate timeout values", () => {
+				// Test valid timeout values
+				const validConfig = {
+					command: "test",
+					timeout: 60,
+				}
+				expect(() => StdioConfigSchema.parse(validConfig)).not.toThrow()
+
+				// Test invalid timeout values
+				const invalidConfigs = [
+					{ command: "test", timeout: 0 }, // Too low
+					{ command: "test", timeout: 3601 }, // Too high
+					{ command: "test", timeout: -1 }, // Negative
+				]
+
+				invalidConfigs.forEach((config) => {
+					expect(() => StdioConfigSchema.parse(config)).toThrow()
+				})
+			})
+
+			it("should use default timeout of 60 seconds if not specified", async () => {
+				const mockConnection: McpConnection = {
+					server: {
+						name: "test-server",
+						config: JSON.stringify({ command: "test" }), // No timeout specified
+						status: "connected",
+					},
+					client: {
+						request: jest.fn().mockResolvedValue({ content: [] }),
+					} as any,
+					transport: {} as any,
+				}
+
+				mcpHub.connections = [mockConnection]
+				await mcpHub.callTool("test-server", "test-tool")
+
+				expect(mockConnection.client.request).toHaveBeenCalledWith(
+					expect.anything(),
+					expect.anything(),
+					expect.objectContaining({ timeout: 60000 }), // 60 seconds in milliseconds
+				)
+			})
+
+			it("should apply configured timeout to tool calls", async () => {
+				const mockConnection: McpConnection = {
+					server: {
+						name: "test-server",
+						config: JSON.stringify({ command: "test", timeout: 120 }), // 2 minutes
+						status: "connected",
+					},
+					client: {
+						request: jest.fn().mockResolvedValue({ content: [] }),
+					} as any,
+					transport: {} as any,
+				}
+
+				mcpHub.connections = [mockConnection]
+				await mcpHub.callTool("test-server", "test-tool")
+
+				expect(mockConnection.client.request).toHaveBeenCalledWith(
+					expect.anything(),
+					expect.anything(),
+					expect.objectContaining({ timeout: 120000 }), // 120 seconds in milliseconds
+				)
+			})
+		})
+
+		describe("updateServerTimeout", () => {
+			it("should update server timeout in settings file", async () => {
+				const mockConfig = {
+					mcpServers: {
+						"test-server": {
+							command: "node",
+							args: ["test.js"],
+							timeout: 60,
+						},
+					},
+				}
+
+				// Mock reading initial config
+				;(fs.readFile as jest.Mock).mockResolvedValueOnce(JSON.stringify(mockConfig))
+
+				await mcpHub.updateServerTimeout("test-server", 120)
+
+				// Verify the config was updated correctly
+				const writeCall = (fs.writeFile as jest.Mock).mock.calls[0]
+				const writtenConfig = JSON.parse(writeCall[1])
+				expect(writtenConfig.mcpServers["test-server"].timeout).toBe(120)
+			})
+
+			it("should fallback to default timeout when config has invalid timeout", async () => {
+				const mockConfig = {
+					mcpServers: {
+						"test-server": {
+							command: "node",
+							args: ["test.js"],
+							timeout: 60,
+						},
+					},
+				}
+
+				// Mock initial read
+				;(fs.readFile as jest.Mock).mockResolvedValueOnce(JSON.stringify(mockConfig))
+
+				// Update with invalid timeout
+				await mcpHub.updateServerTimeout("test-server", 3601)
+
+				// Config is written
+				expect(fs.writeFile).toHaveBeenCalled()
+
+				// Setup connection with invalid timeout
+				const mockConnection: McpConnection = {
+					server: {
+						name: "test-server",
+						config: JSON.stringify({
+							command: "node",
+							args: ["test.js"],
+							timeout: 3601, // Invalid timeout
+						}),
+						status: "connected",
+					},
+					client: {
+						request: jest.fn().mockResolvedValue({ content: [] }),
+					} as any,
+					transport: {} as any,
+				}
+
+				mcpHub.connections = [mockConnection]
+
+				// Call tool - should use default timeout
+				await mcpHub.callTool("test-server", "test-tool")
+
+				// Verify default timeout was used
+				expect(mockConnection.client.request).toHaveBeenCalledWith(
+					expect.anything(),
+					expect.anything(),
+					expect.objectContaining({ timeout: 60000 }), // Default 60 seconds
+				)
+			})
+
+			it("should accept valid timeout values", async () => {
+				const mockConfig = {
+					mcpServers: {
+						"test-server": {
+							command: "node",
+							args: ["test.js"],
+							timeout: 60,
+						},
+					},
+				}
+
+				;(fs.readFile as jest.Mock).mockResolvedValueOnce(JSON.stringify(mockConfig))
+
+				// Test valid timeout values
+				const validTimeouts = [1, 60, 3600]
+				for (const timeout of validTimeouts) {
+					await mcpHub.updateServerTimeout("test-server", timeout)
+					expect(fs.writeFile).toHaveBeenCalled()
+					jest.clearAllMocks() // Reset for next iteration
+					;(fs.readFile as jest.Mock).mockResolvedValueOnce(JSON.stringify(mockConfig))
+				}
+			})
+
+			it("should notify webview after updating timeout", async () => {
+				const mockConfig = {
+					mcpServers: {
+						"test-server": {
+							command: "node",
+							args: ["test.js"],
+							timeout: 60,
+						},
+					},
+				}
+
+				;(fs.readFile as jest.Mock).mockResolvedValueOnce(JSON.stringify(mockConfig))
+
+				await mcpHub.updateServerTimeout("test-server", 120)
+
+				expect(mockProvider.postMessageToWebview).toHaveBeenCalledWith(
+					expect.objectContaining({
+						type: "mcpServers",
+					}),
+				)
+			})
+		})
 	})
 })

src/shared/WebviewMessage.ts

@@ -51,6 +51,7 @@ export interface WebviewMessage {
 		| "restartMcpServer"
 		| "toggleToolAlwaysAllow"
 		| "toggleMcpServer"
+		| "updateMcpTimeout"
 		| "fuzzyMatchThreshold"
 		| "preferredLanguage"
 		| "writeDelayMs"
@@ -99,6 +100,7 @@ export interface WebviewMessage {
 	query?: string
 	slug?: string
 	modeConfig?: ModeConfig
+	timeout?: number
 }
 
 export type ClineAskResponse = "yesButtonClicked" | "noButtonClicked" | "messageResponse"

src/shared/mcp.ts

@@ -7,6 +7,7 @@ export type McpServer = {
 	resources?: McpResource[]
 	resourceTemplates?: McpResourceTemplate[]
 	disabled?: boolean
+	timeout?: number
 }
 
 export type McpTool = {